Message-ID:

Vulcans believe peace should not depend on force. -- Amanda, "Journey to Babel", stardate 3842.3

devel / comp.protocols.dicom / NCI Imaging Data Commons April 2022 release

NCI Imaging Data Commons April 2022 release

<97fb6841-80af-454e-b9e3-490dbe480317n@googlegroups.com>

https://www.rocksolidbbs.com/devel/article-flat.php?id=398&group=comp.protocols.dicom#398

copy link Newsgroups: comp.protocols.dicom

X-Received: by 2002:a05:620a:40ce:b0:67d:4ebe:f3c2 with SMTP id g14-20020a05620a40ce00b0067d4ebef3c2mr6336492qko.631.1649266683159;
Wed, 06 Apr 2022 10:38:03 -0700 (PDT)
X-Received: by 2002:a05:620a:20c2:b0:67d:2fb1:d358 with SMTP id
f2-20020a05620a20c200b0067d2fb1d358mr6574256qka.55.1649266682803; Wed, 06 Apr
2022 10:38:02 -0700 (PDT)
Path: i2pn2.org!i2pn.org!weretis.net!feeder6.news.weretis.net!nntp.club.cc.cmu.edu!45.76.7.193.MISMATCH!3.us.feeder.erje.net!feeder.erje.net!border1.nntp.dca1.giganews.com!nntp.giganews.com!news-out.google.com!nntp.google.com!postnews.google.com!google-groups.googlegroups.com!not-for-mail
Newsgroups: comp.protocols.dicom
Date: Wed, 6 Apr 2022 10:38:02 -0700 (PDT)
Injection-Info: google-groups.googlegroups.com; posting-host=170.223.207.1; posting-account=HItBBgoAAABRvKHgQ0-cHJqH2Lj570Je
NNTP-Posting-Host: 170.223.207.1
User-Agent: G2/1.0
MIME-Version: 1.0
Message-ID: <97fb6841-80af-454e-b9e3-490dbe480317n@googlegroups.com>
Subject: NCI Imaging Data Commons April 2022 release
From: andrey.fedorov@gmail.com (Andrey Fedorov)
Injection-Date: Wed, 06 Apr 2022 17:38:03 +0000
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable
Lines: 28

by: Andrey Fedorov - Wed, 6 Apr 2022 17:38 UTC

NCI Imaging Data Commons (https://imaging.datacommons.cancer.gov/) April 2022 release is out!

Here are some of the highlights:

* Data (release notes here: https://learn.canceridc.dev/data/data-release-notes#v8-april-2022): slide microscopy imaging data is now available for all of the TCGA collections and for the NLST collection - that’s the total of >14 TB of new slide microscopy data (if you are curious how to get to this number, check out this query: https://gist.github.com/fedorov/a956b59eefb1f201477e5812e3817813)
* Portal (release notes: https://learn.canceridc.dev/portal/release-notes#8..0-april-4-2022-canceridc.202204050856.2920c81): you can now choose whether you want to search the collections that are no longer available in IDC, and they are now excluded by default; we also excluded those collections from the overall statistics on the front page, which resulted in the reduction in data summary numbers relative to v7
* Viewers (release notes: https://learn.canceridc.dev/portal/viewer-release-notes#4.12.17-february-2022-ohif): we added new features for quantitative microscopy imaging and several performance enhancements, including client-side decoding and color correction of compressed images using WebAssembly as well as transformation and rendering of images using WebGL

Live dashboard summarizing availability of IDC data is available here: https://datastudio.google.com/reporting/04cf5976-4ea0-4fee-a749-8bfd162f2e87/page/p_s7mk6eybqc.

Andrey Fedorov
NCI Imaging Data Commons co-PI

Subject	Author
NCI Imaging Data Commons April 2022 release	Andrey Fedorov